Transcript: SHANK1-006 OTTHUMT00000268076.2

Description

SH3 and multiple ankyrin repeat domains 1

Location

Chromosome 19: 50,662,630-50,666,733 reverse strand.

About this transcript

This transcript has 3 exons and is annotated with 10 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000137380 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
SHANK1-001	OTTHUMT00000268071.1	6643	2161aa	OTTHUMP00000174437	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS12799	Q9Y566
SHANK1-002	OTTHUMT00000268072.1	6622	2169aa	OTTHUMP00000174438	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
SHANK1-008	OTTHUMT00000465240.2	6459	2152aa	OTTHUMP00000270947	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
SHANK1-003	OTTHUMT00000268073.1	4785	1548aa	OTTHUMP00000174439	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
SHANK1-006	OTTHUMT00000268076.2	668	183aa	OTTHUMP00000270948	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
SHANK1-007	OTTHUMT00000268077.2	422	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
SHANK1-004	OTTHUMT00000268074.1	780	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
SHANK1-005	OTTHUMT00000268075.1	558	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 3 Transcript length: 668 bps Translation length: 183 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 28/02/2014 (Created on 23/05/2006)

Alternative symbols

AC008743.6-006

Remarks

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 50,662,630-50,666,733 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000468654

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: SHANK1-006 OTTHUMT00000268076.2

Summary

Transcript-based displays