Transcript: TM6SF1-003 OTTHUMT00000419712.2

Description

transmembrane 6 superfamily member 1

Location

Chromosome 15: 83,107,648-83,137,281 forward strand.

About this transcript

This transcript has 10 exons and is annotated with 7 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000147365 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
TM6SF1-001	OTTHUMT00000304009.1	2074	370aa	OTTHUMP00000190873	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS10323	Q9BZW5
TM6SF1-006	OTTHUMT00000419710.1	1638	188aa	OTTHUMP00000248977	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS81915	Q6P4D7
TM6SF1-005	OTTHUMT00000419714.2	1020	339aa	OTTHUMP00000248979	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS45338	E9PD04
TM6SF1-009	OTTHUMT00000419783.2	856	166aa	OTTHUMP00000249010	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	H3BM84	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
TM6SF1-010	OTTHUMT00000419786.1	407	30aa	OTTHUMP00000249012	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
TM6SF1-002	OTTHUMT00000419711.1	1641	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
TM6SF1-003	OTTHUMT00000419712.2	1808	133aa	OTTHUMP00000256130	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	E9PD04
TM6SF1-004	OTTHUMT00000419713.1	1469	145aa	OTTHUMP00000248978	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	Q8N5N8
TM6SF1-008	OTTHUMT00000419781.1	548	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-

Summary

Statistics

Exons: 10 Transcript length: 1,808 bps Translation length: 133 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 28/02/2014 (Created on 13/07/2011)

Alternative symbols

AC024270.1-003

Other assemblies

This transcript maps to 83,107,648-83,137,281 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000379384

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: TM6SF1-003 OTTHUMT00000419712.2

Summary

Transcript-based displays