Transcript: LSG1-004 OTTHUMT00000342743.2

Description

large subunit GTPase 1 homolog (S. cerevisiae)

Location

Chromosome 3: 194,644,666-194,653,102 reverse strand.

About this transcript

This transcript has 6 exons and is annotated with 9 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000156021 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
LSG1-001	OTTHUMT00000342740.1	3572	658aa	OTTHUMP00000209073	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS33922	Q9H089
LSG1-004	OTTHUMT00000342743.2	854	285aa	OTTHUMP00000209075	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	H7C2X7	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete
LSG1-003	OTTHUMT00000342742.1	755	178aa	OTTHUMP00000209074	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-
LSG1-002	OTTHUMT00000342741.1	539	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
LSG1-006	OTTHUMT00000342745.1	791	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
LSG1-007	OTTHUMT00000342746.1	668	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
LSG1-008	OTTHUMT00000342747.1	590	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
LSG1-005	OTTHUMT00000342744.1	428	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 6 Transcript length: 854 bps Translation length: 285 residues

Class

Novel protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 09/07/2015 (Created on 27/11/2008)

Alternative symbols

AC046143.2-004

Remarks

GENCODE experimental pipeline

CDS start not found

CDS end not found

mRNA start not found

mRNA end not found

Other assemblies

This transcript maps to 194,644,666-194,653,102 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000437613

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: LSG1-004 OTTHUMT00000342743.2

Summary

Transcript-based displays