Transcript: CHPF2-004 OTTHUMT00000348844.1

Description

chondroitin polymerizing factor 2

Location

About this transcript

This transcript has 4 exons and is annotated with 4 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
CHPF2-001	OTTHUMT00000348648.3	3978	772aa	OTTHUMP00000212063	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS34779	Q9P2E5
CHPF2-002	OTTHUMT00000348842.1	2709	764aa	OTTHUMP00000212170	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS64803	G5E9W2
CHPF2-003	OTTHUMT00000348843.2	548	90aa	OTTHUMP00000212171	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
CHPF2-005	OTTHUMT00000349266.2	3549	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
CHPF2-004	OTTHUMT00000348844.1	782	123aa	OTTHUMP00000212172	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	H7C5L5	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Summary

Statistics

Exons: 4 Transcript length: 782 bps Translation length: 123 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 28/02/2014 (Created on 05/03/2009)

Alternative symbols

RP4-548D19.1-004

Remarks

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 151,235,451-151,237,593 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000465601

Curation Method

Manual annotation from Havana