Transcript: CMSS1-001 OTTHUMT00000353060.2

Description

cms1 ribosomal small subunit homolog (yeast)

Location

Chromosome 3: 99,817,834-100,181,732 forward strand.

About this transcript

This transcript has 10 exons and is annotated with 5 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000159054 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
CMSS1-001	OTTHUMT00000353060.2	4330	279aa	OTTHUMP00000213941	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS2935	Q9BQ75
CMSS1-003	OTTHUMT00000353062.1	1056	261aa	OTTHUMP00000213942	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS54618	-
CMSS1-006	OTTHUMT00000353065.2	753	225aa	OTTHUMP00000213945	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
CMSS1-008	OTTHUMT00000353067.1	538	82aa	OTTHUMP00000213946	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
CMSS1-004	OTTHUMT00000353063.2	397	25aa	OTTHUMP00000213943	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
CMSS1-005	OTTHUMT00000353064.1	881	38aa	OTTHUMP00000213944	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-
CMSS1-002	OTTHUMT00000353061.1	2145	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
CMSS1-009	OTTHUMT00000353068.1	477	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
CMSS1-007	OTTHUMT00000353066.1	654	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 10 Transcript length: 4,330 bps Translation length: 279 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS2935

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 21/01/2016 (Created on 30/04/2009)

Alternative symbols

RP11-15N24.1-001

Other assemblies

This transcript maps to 99,817,834-100,181,732 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000421999

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: CMSS1-001 OTTHUMT00000353060.2

Summary

Transcript-based displays