Transcript: FAM60A-009 OTTHUMT00000400349.1

Description

family with sequence similarity 60, member A

Location

Chromosome 12: 31,282,639-31,298,175 reverse strand.

About this transcript

This transcript has 6 exons and is annotated with 2 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000168586 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
FAM60A-001	OTTHUMT00000400347.1	3163	221aa	OTTHUMP00000239099	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS8723	Q9NP50
FAM60A-004	OTTHUMT00000400348.1	1555	221aa	OTTHUMP00000239100	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS8723	Q9NP50
FAM60A-002	OTTHUMT00000400346.1	2532	73aa	OTTHUMP00000239098	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
FAM60A-007	OTTHUMT00000400350.1	738	73aa	OTTHUMP00000239102	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
FAM60A-008	OTTHUMT00000400352.2	669	126aa	OTTHUMP00000239104	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
FAM60A-006	OTTHUMT00000400351.2	459	134aa	OTTHUMP00000239103	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
FAM60A-009	OTTHUMT00000400349.1	845	59aa	OTTHUMP00000239101	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
FAM60A-005	OTTHUMT00000400353.1	1734	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
FAM60A-003	OTTHUMT00000400345.1	3111	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 6 Transcript length: 845 bps Translation length: 59 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 28/02/2014 (Created on 10/11/2010)

Alternative symbols

RP11-627K11.2-009

Remarks

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 31,282,639-31,298,175 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000544921

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: FAM60A-009 OTTHUMT00000400349.1

Summary

Transcript-based displays