Transcript: GALNT16-001 OTTHUMT00000412435.2

Description

UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1

Location

Chromosome 14: 69,260,174-69,354,466 forward strand.

About this transcript

This transcript has 15 exons and is annotated with 12 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000171231 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt
GALNT16-002	OTTHUMT00000412434.2	5708	558aa	OTTHUMP00000245507	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS32107	Q8N428
GALNT16-003	OTTHUMT00000412436.1	2270	558aa	OTTHUMP00000245509	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS32107	Q8N428
GALNT16-004	OTTHUMT00000412437.2	1629	542aa	OTTHUMP00000245510	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
GALNT16-011	OTTHUMT00000412989.1	866	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
GALNT16-001	OTTHUMT00000412435.2	5548	542aa	OTTHUMP00000245508	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-
GALNT16-008	OTTHUMT00000412431.1	630	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
GALNT16-009	OTTHUMT00000412433.1	604	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
GALNT16-007	OTTHUMT00000412432.1	579	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
GALNT16-006	OTTHUMT00000412439.1	568	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
GALNT16-005	OTTHUMT00000412438.1	520	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
GALNT16-010	OTTHUMT00000412440.1	340	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-

Summary

Statistics

Exons: 15 Transcript length: 5,548 bps Translation length: 542 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 28/02/2014 (Created on 04/04/2011)

Alternative symbols

CTD-2525P14.1-001

Remarks

non canonical conserved

Other assemblies

This transcript maps to 69,260,174-69,354,466 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000553471

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: GALNT16-001 OTTHUMT00000412435.2

Summary

Transcript-based displays