Transcript: ARID3A-003 OTTHUMT00000474218.1

Description

AT rich interactive domain 3A (BRIGHT-like)

Location

Chromosome 19: 932,565-964,366 forward strand.

About this transcript

This transcript has 4 exons and is annotated with 5 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000182018 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
ARID3A-001	OTTHUMT00000458219.2	5941	593aa	OTTHUMP00000267848	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS12050	Q99856
ARID3A-005	OTTHUMT00000458678.4	1016	338aa	OTTHUMP00000268078	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	K7EJ04	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete
ARID3A-003	OTTHUMT00000474218.1	549	96aa	OTTHUMP00000274913	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	H0YFY1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
ARID3A-004	OTTHUMT00000458221.2	564	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
ARID3A-002	OTTHUMT00000458218.1	377	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
ARID3A-007	OTTHUMT00000474420.1	581	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
ARID3A-006	OTTHUMT00000458223.3	473	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 4 Transcript length: 549 bps Translation length: 96 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 28/02/2014 (Created on 09/09/2013)

Alternative symbols

AC005391.1-003

Remarks

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 932,565-964,366 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000457152

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: ARID3A-003 OTTHUMT00000474218.1

Summary

Transcript-based displays