Transcript: RP4-583P15.15-003 OTTHUMT00000478817.2

Description

novel protein, ZGPAT-LIME1 readthrough

Location

About this transcript

This transcript has 4 exons and is annotated with 6 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
RP4-583P15.15-004	OTTHUMT00000487960.1	872	290aa	OTTHUMP00000281126	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	A0A0J9YYD9	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
RP4-583P15.15-003	OTTHUMT00000478817.2	507	169aa	OTTHUMP00000277720	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	A0A087WT57	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete
RP4-583P15.15-002	OTTHUMT00000145223.3	3477	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
RP4-583P15.15-001	OTTHUMT00000473237.1	3119	417aa	OTTHUMP00000274481	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	V9GY48	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Summary

Statistics

Exons: 4 Transcript length: 507 bps Translation length: 169 residues

Class

Putative protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 09/07/2015 (Created on 01/04/2014)

Annotation Attributes

dotter confirmed [Definitions]

not organism-supported

readthrough

Remarks

CDS start not found

CDS end not found

mRNA start not found

mRNA end not found

Other assemblies

This transcript maps to 63,735,463-63,738,441 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000496820

Curation Method

Manual annotation from Havana