Transcript: COL28A1-004 OTTHUMT00000315902.1

Description

collagen, type XXVIII, alpha 1

Location

Chromosome 7: 7,431,218-7,437,435 reverse strand.

About this transcript

This transcript has 5 exons and is annotated with 4 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000150034 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
COL28A1-001	OTTHUMT00000315899.1	4277	1125aa	OTTHUMP00000196066	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS43553	Q2UY09
COL28A1-006	OTTHUMT00000315904.1	700	80aa	OTTHUMP00000196068	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	H7BZU0	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
COL28A1-004	OTTHUMT00000315902.1	678	130aa	OTTHUMP00000196067	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
COL28A1-005	OTTHUMT00000315903.2	2323	142aa	OTTHUMP00000201669	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	H7C3P2	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
COL28A1-002	OTTHUMT00000315900.2	1755	67aa	OTTHUMP00000201668	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
COL28A1-003	OTTHUMT00000315901.1	722	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 5 Transcript length: 678 bps Translation length: 130 residues

Class

Putative protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 28/02/2014 (Created on 18/01/2007)

Alternative symbols

AC004982.2-004

Remarks

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 7,431,218-7,437,435 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000435823

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: COL28A1-004 OTTHUMT00000315902.1

Summary

Transcript-based displays