Transcript: Col27a1-007 OTTMUST00000054419.2

Description

procollagen type XXVII alpha 1

Location

Chromosome 4: 63,282,667-63,333,720 forward strand.

About this transcript

This transcript has 40 exons and is annotated with 16 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000000244 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Col27a1-001	OTTMUST00000000701.1	7612	1845aa	OTTMUSP00000000312	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS18250	Q5QNQ9
Col27a1-004	OTTMUST00000054416.2	4281	943aa	OTTMUSP00000065345	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-
Col27a1-007	OTTMUST00000054419.2	3215	448aa	OTTMUSP00000065346	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Col27a1-005	OTTMUST00000054417.1	1485	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Col27a1-003	OTTMUST00000054415.1	4916	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Col27a1-002	OTTMUST00000000702.2	4580	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Col27a1-006	OTTMUST00000054418.1	4279	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 40 Transcript length: 3,215 bps Translation length: 448 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 05/02/2013 (Created on 29/01/2007)

Alternative symbols

RP23-340H1.1-007

Remarks

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 63,282,667-63,333,720 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000183913

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Col27a1-007 OTTMUST00000054419.2

Summary

Transcript-based displays