Transcript: Sparc-008 OTTMUST00000154578.1

Description

secreted acidic cysteine rich glycoprotein

Location

Chromosome 11: 55,395,421-55,420,290 reverse strand.

About this transcript

This transcript has 11 exons and is annotated with 20 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000005692 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Sparc-001	OTTMUST00000012666.2	2300	302aa	OTTMUSP00000005868	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS24712	P07214
Sparc-002	OTTMUST00000012667.2	2115	301aa	OTTMUSP00000005869	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS70189	Q5NCU4
Sparc-007	OTTMUST00000154539.1	1269	302aa	OTTMUSP00000079890	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS24712	-
Sparc-008	OTTMUST00000154578.1	1366	332aa	OTTMUSP00000079909	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
Sparc-009	OTTMUST00000154579.1	1304	332aa	OTTMUSP00000079910	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
Sparc-003	OTTMUST00000012668.3	640	172aa	OTTMUSP00000005870	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	Q5NCU3	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Sparc-006	OTTMUST00000012671.1	909	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Sparc-004	OTTMUST00000012669.1	907	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Sparc-005	OTTMUST00000012670.1	741	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 11 Transcript length: 1,366 bps Translation length: 332 residues

Class

Putative protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 14/07/2016 (Created on 14/07/2016)

Alternative symbols

RP23-465I4.1-008

Annotation Attributes

RNA-Seq supported only [Definitions]

Remarks

upstream uORF

Other assemblies

This transcript maps to 55,395,421-55,420,290 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000213866

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Sparc-008 OTTMUST00000154578.1

Summary

Transcript-based displays