Transcript: Cxcl16-002 OTTMUST00000013603.3

Description

chemokine (C-X-C motif) ligand 16

Location

About this transcript

This transcript has 6 exons and is annotated with 3 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Cxcl16-001	OTTMUST00000013602.1	2699	246aa	OTTMUSP00000006308	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS24948	Q8BSU2
Cxcl16-002	OTTMUST00000013603.3	1267	233aa	OTTMUSP00000053067	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	I7HIQ2	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Cxcl16-004	OTTMUST00000040903.1	1662	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 6 Transcript length: 1,267 bps Translation length: 233 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 3, last modified on 10/03/2012 (Created on 01/10/2003)

Alternative symbols

RP23-42P20.1-002

Remarks

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 70,454,238-70,459,408 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000126391

Curation Method

Manual annotation from Havana