Transcript: Hoxa9-002 OTTMUST00000045396.3

Description

homeobox A9

Location

Chromosome 6: 52,224,121-52,226,189 reverse strand.

About this transcript

This transcript has 3 exons and is annotated with 5 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000018873 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt
Hoxa9-001	OTTMUST00000045395.3	3226	271aa	OTTMUSP00000020422	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS20146	P09631
Hoxa9-002	OTTMUST00000045396.3	851	105aa	OTTMUSP00000023562	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
Hoxa9-004	OTTMUST00000065045.2	678	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Hoxa9-003	OTTMUST00000065044.3	462	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Hoxa9-005	OTTMUST00000096394.1	2286	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 3 Transcript length: 851 bps Translation length: 105 residues

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 3, last modified on 14/02/2013 (Created on 26/07/2006)

Alternative symbols

RP23-329P9.5-002

Remarks

NMD exception

This variant (called Hoxa9T) (Fujimoto et al 1998, PMID: 9524228) has been shown to be well conserved (back to chicken), to be expressed (by RT-PCR) and have some functional actvity in vitro (Dintilhac et al 2004, PMID: 15161102). Although the translation has not been shown in vivo, the protein is conserved in human

Other assemblies

This transcript maps to 52,224,121-52,226,189 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000114425

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Hoxa9-002 OTTMUST00000045396.3

Summary

Transcript-based displays