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Updated annotation available

There is updated annotation for this transcript available here.

Description

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A

Location
About this transcript

This transcript has 15 exons and is annotated with 12 domains and features.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtFlags
Sema4a-001OTTMUST000000503563205760aaOTTMUSP00000023497
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS17475Q62178
Sema4a-002OTTMUST000000503572897628aaOTTMUSP00000023498
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YWV5
Sema4a-004OTTMUST00000050359845234aaOTTMUSP00000023500
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Sema4a-005OTTMUST00000050360706203aaOTTMUSP00000023501
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Sema4a-003OTTMUST0000005035863061aaOTTMUSP00000023499
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Sema4a-011OTTMUST00000050366506113aaOTTMUSP00000023503
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Sema4a-010OTTMUST0000005036538517aaOTTMUSP00000023502
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Sema4a-008OTTMUST00000050363866170aaOTTMUSP00000065316
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
--
Sema4a-009OTTMUST00000050364748180aaOTTMUSP00000065317
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
--
Sema4a-007OTTMUST0000005036269947aaOTTMUSP00000065315
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
--CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
Sema4a-012OTTMUST00000050367371No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
--
Sema4a-015OTTMUST000000503702487No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--
Sema4a-014OTTMUST000000503692357No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--
Sema4a-016OTTMUST000000503712108No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--
Sema4a-006OTTMUST00000050361713No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--
Sema4a-013OTTMUST00000050368465No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--
Statistics

Exons: 15 Transcript length: 3,205 bps Translation length: 760 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS17475

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 05/02/2013 (Created on 25/10/2006)

Alternative symbols

AC102388.1-001

Remarks

6030492A12Rik

alternative 5' UTR

F630026I17Rik

I830083E12Rik

I830125N01Rik

Other assemblies

This transcript maps to 88,435,959-88,455,739 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts
Ensembl transcript having exact match with Havana:
Curation Method

Manual annotation from Havana

Transcript-based displays