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Description

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A

Location
Gene

This transcript is a product of gene OTTMUSG00000021258

This gene has 16 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtFlags
Sema4a-001OTTMUST000000503563205 bp760 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS17475Q62178
Sema4a-002OTTMUST000000503572897 bp628 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D3YWV5
Sema4a-004OTTMUST00000050359845 bp234 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Sema4a-005OTTMUST00000050360706 bp203 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Sema4a-003OTTMUST00000050358630 bp61 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Sema4a-011OTTMUST00000050366506 bp113 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Sema4a-010OTTMUST00000050365385 bp17 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
Sema4a-008OTTMUST00000050363866 bp170 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
--
Sema4a-009OTTMUST00000050364748 bp180 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
--
Sema4a-007OTTMUST00000050362699 bp47 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
--CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
Sema4a-012OTTMUST00000050367371 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
--
Sema4a-015OTTMUST000000503702487 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--
Sema4a-014OTTMUST000000503692357 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--
Sema4a-016OTTMUST000000503712108 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--
Sema4a-006OTTMUST00000050361713 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--
Sema4a-013OTTMUST00000050368465 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--
Statistics

Exons: 15 Transcript length: 3,205 bps Translation length: 760 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS17475

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 05/02/2013 (Created on 25/10/2006)

Alternative symbols

AC102388.1-001

Remarks

6030492A12Rik

alternative 5' UTR

F630026I17Rik

I830083E12Rik

I830125N01Rik

Other assemblies

This transcript maps to 88,435,959-88,455,739 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts
Ensembl transcript having exact match with Havana:
Curation Method

Transcript-based displays