Transcript: Nphp3-005 OTTMUST00000078593.1

Description

nephronophthisis 3 (adolescent)

Location

Chromosome 9: 104,002,767-104,042,344 forward strand.

About this transcript

This transcript has 25 exons and is annotated with 6 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000031730 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Nphp3-001	OTTMUST00000078589.2	5899	1325aa	OTTMUSP00000041811	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS40749	Q7TNH6
Nphp3-002	OTTMUST00000078590.1	4722	1205aa	OTTMUSP00000041812	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
Nphp3-007	OTTMUST00000125938.1	418	136aa	OTTMUSP00000068158	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Nphp3-008	OTTMUST00000154236.1	279	43aa	OTTMUSP00000079767	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Nphp3-005	OTTMUST00000078593.1	3761	538aa	OTTMUSP00000041813	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-
Nphp3-003	OTTMUST00000078591.1	3925	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Nphp3-004	OTTMUST00000078592.1	1893	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Nphp3-006	OTTMUST00000125937.1	336	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 25 Transcript length: 3,761 bps Translation length: 538 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 29/06/2016 (Created on 28/02/2008)

Alternative symbols

RP23-380A10.2-005

Annotation Attributes

not organism-supported [Definitions]

Remarks

NAGNAG splice site

Other assemblies

This transcript maps to 104,002,767-104,042,344 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000193439

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Nphp3-005 OTTMUST00000078593.1

Summary

Transcript-based displays