Transcript: Hps1-001 OTTMUST00000080945.3

Description

Hermansky-Pudlak syndrome 1 homolog (human)

Location

Chromosome 19: 42,755,105-42,779,978 reverse strand.

About this transcript

This transcript has 20 exons and is annotated with 4 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000032530 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Hps1-001	OTTMUST00000080945.3	2847	704aa	OTTMUSP00000043177	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS37992	A0A0R4J062
Hps1-009	OTTMUST00000083393.1	2647	704aa	OTTMUSP00000044809	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS37992	A0A0R4J062
Hps1-003	OTTMUST00000080947.1	3196	635aa	OTTMUSP00000043179	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
Hps1-002	OTTMUST00000080946.1	2952	712aa	OTTMUSP00000043178	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
Hps1-005	OTTMUST00000080949.1	2608	627aa	OTTMUSP00000043181	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
Hps1-006	OTTMUST00000080952.3	462	24aa	OTTMUSP00000044811	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Hps1-004	OTTMUST00000080948.2	4189	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Hps1-008	OTTMUST00000080954.1	692	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Hps1-007	OTTMUST00000080953.1	389	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 20 Transcript length: 2,847 bps Translation length: 704 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS37992

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 3, last modified on 02/10/2013 (Created on 08/04/2008)

Alternative symbols

AC125458.1-001

Remarks

E230008G18Rik

F630311N05Rik

Other assemblies

This transcript maps to 42,755,105-42,779,978 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000162004

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Hps1-001 OTTMUST00000080945.3

Summary

Transcript-based displays