Transcript: Sssca1-006 OTTMUST00000089216.1

Description

Sjogren's syndrome/scleroderma autoantigen 1 homolog (human)

Location

About this transcript

This transcript has 5 exons and is annotated with 5 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Sssca1-001	OTTMUST00000089211.1	693	199aa	OTTMUSP00000048708	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS29479	Q545N1
Sssca1-002	OTTMUST00000089212.1	705	88aa	OTTMUSP00000048709	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
Sssca1-003	OTTMUST00000089213.1	526	59aa	OTTMUSP00000048710	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Sssca1-006	OTTMUST00000089216.1	2532	199aa	OTTMUSP00000048711	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	CCDS29479	Q545N1
Sssca1-004	OTTMUST00000089214.1	826	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Sssca1-005	OTTMUST00000089215.1	610	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 5 Transcript length: 2,532 bps Translation length: 199 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29479

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 23/07/2012 (Created on 08/09/2009)

Alternative symbols

RP24-179M18.2-006

Other assemblies

This transcript maps to 5,728,088-5,731,713 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000160852

Curation Method

Manual annotation from Havana