Transcript: Vta1-001 OTTMUST00000079146.1

Description

Vps20-associated 1 homolog (S. cerevisiae)

Location

About this transcript

This transcript has 8 exons and is annotated with 8 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Vta1-001	OTTMUST00000079146.1	1974	309aa	OTTMUSP00000042172	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS23705	Q9CR26
Vta1-006	OTTMUST00000079151.2	753	251aa	OTTMUSP00000042176	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	F6W5Q8	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete
Vta1-002	OTTMUST00000079147.1	1219	38aa	OTTMUSP00000042173	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	F8WJC2
Vta1-004	OTTMUST00000079149.1	301	70aa	OTTMUSP00000042175	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	F6RYM7	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Vta1-003	OTTMUST00000079148.2	475	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Vta1-005	OTTMUST00000079150.1	600	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 8 Transcript length: 1,974 bps Translation length: 309 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS23705

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 05/09/2013 (Created on 13/03/2008)

Alternative symbols

RP24-430N21.2-001

Other assemblies

This transcript maps to 14,654,755-14,705,560 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000154132

Curation Method

Manual annotation from Havana