Transcript: COL20A1-009 OTTHUMT00000315835.2

Description

collagen, type XX, alpha 1

Location

Chromosome 20: 63,320,099-63,328,479 forward strand.

About this transcript

This transcript has 10 exons and is annotated with 7 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000032964 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
COL20A1-006	OTTHUMT00000144595.2	4172	1284aa	OTTHUMP00000070554	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS46628	Q9P218
COL20A1-001	OTTHUMT00000080130.4	8097	1297aa	OTTHUMP00000031549	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
COL20A1-004	OTTHUMT00000080133.16	1204	401aa	OTTHUMP00000070555	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete
COL20A1-009	OTTHUMT00000315835.2	750	250aa	OTTHUMP00000196031	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete
COL20A1-008	OTTHUMT00000315834.1	723	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
COL20A1-005	OTTHUMT00000144594.2	4536	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
COL20A1-002	OTTHUMT00000080131.4	1924	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
COL20A1-007	OTTHUMT00000144596.2	1497	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 10 Transcript length: 750 bps Translation length: 250 residues

Class

Novel protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 09/07/2015 (Created on 17/01/2007)

Alternative symbols

RP11-261N11.13-009

Remarks

CDS start not found

CDS end not found

mRNA start not found

mRNA end not found

Other assemblies

This transcript maps to 63,320,099-63,328,479 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000455906

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: COL20A1-009 OTTHUMT00000315835.2

Summary

Transcript-based displays