Transcript: Sdc1-004 OTTMUST00000083829.2

Description

syndecan 1

Location

About this transcript

This transcript has 3 exons and is annotated with 5 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Sdc1-001	OTTMUST00000083825.2	3157	311aa	OTTMUSP00000045098	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS25803	P18828
Sdc1-004	OTTMUST00000083829.2	638	206aa	OTTMUSP00000045103	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	E0CYT6	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Sdc1-002	OTTMUST00000083826.1	2311	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
Sdc1-003	OTTMUST00000083828.1	342	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Sdc1-005	OTTMUST00000083830.1	855	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 3 Transcript length: 638 bps Translation length: 206 residues

Class

Putative protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 10/07/2015 (Created on 12/08/2008)

Alternative symbols

RP23-344H23.2-004

Remarks

upstream_ATG-52

CDS end not found

mRNA end not found

Other assemblies

This transcript maps to 8,771,742-8,790,842 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000161883

Curation Method

Manual annotation from Havana